| Blast form When you've selected your parameters hit GO! Please choose a program:
and a database do you want to search:
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Please enter your sequence in free format
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Options
Filter Query sequence:
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Query strands to search against database:
Set sensitivity (Word length):
For blastn (DNA searches)
For blastp etc (protein search)
Set expectation threshold (E parameter):
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Select alignment view option
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Maximum number of sequences to display:
Output mode:
MSP processing options ?
MSP display mode
HSP ajacency rejection mode:
HSP bias-ratio rejection threshold:
How do you want to view the results
Do you want debugging output
Version of April 2000.
This blast interface has largely been adapted from the blast2 server interface hosted at the University of Oxford Bioinformatics Center.
Original Interface by John Peden. Updated by Nicki Gray. Changes include migration from the cgi-lib.pl module to Lincoln Stein's CGI.pm module and the ability to make and archive 'blast databases' from searches involving multiple query sequ
ences. Many thanks to OUCS.
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