MINE Welcome page

Input, Format, View	Analyze	Extras	Site Management	Q8r1-96 Genome Database
Submit	Blast	All Scripts	Admin	HOME
Edit	G+C & More	Link MINE	"MINE"	List of Genes
Translate & Convert	Remote Tools	Manual	HOME	Index
View Data Log	Search & Display	Comments	MINE	Related Links
Statistics	Search Engine	Web Log	FAQ	Contact Us

Welcome to "MINE"
You have entered the portion of the Q8r1-96 Genome Database where you can actually see and use the scripts used to store the primary data and do basic data-mining (e.g. blast). We refer to these scripts collectively as the Molecular INformation Explorer project, or "MINE". Go here to the MINE FAQ to see why or to read a bit about the purpose or philosophy of this open-source project. To return to the Q8r1-96 Genome Database homepage select HOME from the above menu.

Here are a few of the things you can do using the MINE options in the above MINE navigation menu:

Directly View all the primary sequence files and related analysis files (i.e. blast reports).
Select Data Log and then click on a file (Q8_001.db or ).

Do a blast search against the Q8r1-96 Genome Database:
Select Blast and the "SELF_blast_database" option which contains all sequences in the Q8r1-96 Genome Database.

Use the search engine to search all entries and to create lists of subsets of sequences that match particular criteria (e.g. G+C or sequence length). Or use the display function to see a particular subset of stored information about all files in the database, for example the top blast matches for each entry. If you select "MORE Search Parameters" you can concatenate searches to generate progressively complex and refined searches.
Select Search, pick a display format, and then fill in the search options.