Check the fields used by the submit, edit, and search engine scripts: MINE_Preferences.

Summarize the best matches in blast reports: Summarize Blast Reports.

Generate a link for each entry to the 1) raw text 2) html and 3) edit form: BatchEdit

See the QUICKMINE.config file: QUICKMINE.config that is used with the QUICKMINE_script

Update copies of the web-viewable source code for all scripts. To add security, you may wish to restrict some of the code that gets copied into world-viewable source code made with this command. In this version, all code is viewable.

Produce a list of all the files included in this version of MINE

This command converts all the .db entries in your database (specified in the MINE_Customization_File) into fasta formatted files (e.g. for use with blast).

Each *.db file will be used to produce a *.db.fasta file. Only use if you have enough disk space to keep multiple copies of your database entries. The main reason to create fasta formatted copies is that these files can be piped into the blast interface.

A file called "SELF_blast_database" is simultaneously made. This file contains all the specified .db files in fasta format. Use formatdb to turn this into a blast-ready database using the code in the script make_BLAST_DATABASES. This script can either be run from the command line, or entered into your crontab file for automation (see crontab in the documentation to see how to do this).