Mathematical Genetics
Fall 2017
Dr. Richard Gomulkiewicz
Dr. Stephen Krone

Lecture	Date	Location	Topics covered	Reading	Homework & Materials
1	Aug. 21	Go to your home institution: WSU (CUE 407) UI (TLC 223)	Organizational Meeting		Gillespie book (1st ed.)
2	Aug. 23	UI (TLC 223)	Gomulkiewicz: Mini-intro to selection Fixation probability of favored mutation	Gillespie chapter 1	Intro to Selection Lecture Notes Kreitman 1983 Harris 1966
3	Aug. 28	WSU (CUE 407)	Gomulkiewicz: Fixation probability of favored mutation Gillespie chapter 1	Gillespie chapter 2 1st ed: §§2.1 - 4 2nd ed: §§2.1 - 5
4	Aug. 30	UI (TLC 223)	Gomulkiewicz: Gillespie chapter 1 Gillespie chapter 2	Gillespie chapter 3 1st ed: §§3.1 - 8 2nd ed: §§3.1 - 4, 6-7,9 & pp. 200-206	Kimura & Ohta 1971 Greenberg & Crow 1960
	Sep. 4		Holiday (Labor Day)		R Scripts: Deterministic geometric population growth Deterministic spread of a mutation Stochastic population growth Simulate Wright-Fisher model
	Sep. 5	WSU (Abelson 306) 12:00-1:00	Programming in R: Introduction		download R here
	Sep. 6	WSU (Abelson 306) 12:00-1:00	Programming in R: Introduction
5	Sep. 6	UI (TLC 223)	Gomulkiewicz: Gillespie chapter 2 Gillespie chapter 3		Homework 1
6	Sep. 11	WSU (CUE 407)	Gomulkiewicz: Gillespie chapter 3		Gillespie 2nd ed., Chapter 4
7	Sep. 13	UI (TLC 223)	Gomulkiewicz: Gillespie chapter 3	Gillespie 2nd ed., chapter 4
8	Sep. 18	WSU (CUE 407)	Gomulkiewicz: Gillespie chapter 3 (selection & drift) Gillespie 2nd chapter 4	Gillespie 2nd ed: chapter 5 1st ed: chapter 4
9	Sep. 20	UI (TLC 223)	Gomulkiewicz: Gillespie 2nd chapter 4		Homework 1 due Homework 2
10	Sep. 25	WSU (CUE 407)	Gomulkiewicz: Gillespie 2nd chapter 4 Gillespie 2nd ch. 5/1st ch. 4	Gillespie 2nd ed: chapter 6 1st ed: chapter 5	Morton, Crow & Muller 1956
11	Sep. 27	UI (TLC 223)	Gomulkiewicz: Gillespie 2nd ch. 5/1st ch. 4
12	Oct. 2	WSU (CUE 407)	Gomulkiewicz: Gillespie 2nd ch. 6/1st ch. 5
13	Oct. 4	UI (TLC 223)	Gomulkiewicz: Gillespie 2nd ch. 6/1st ch. 5		Homework 2 due
14	Oct. 9	WSU (CUE 407)	Krone:		Coalescent Lecture Notes suggested reference: Coalescent Theory, An Introduction by John Wakeley
15	Oct. 11	UI (TLC 223)	Krone:		Homework 3
16	Oct. 16	WSU (CUE 407)	Krone:
17	Oct. 18	UI (TLC 223)	Krone:
18	Oct. 23	WSU (CUE 407)	Krone:
19	Oct. 25	UI (TLC 223)	Krone:		Homework 3 due Homework 4
20	Oct. 30	WSU (CUE 407)	Krone:
21	Nov. 1	UI (TLC 223)	Krone:
22	Nov. 6	WSU (CUE 407)	Krone:
23	Nov. 8	UI (TLC 223)	Krone:		Homework 4 due
24	Nov. 13	WSU (CUE 407)	Krone:		Homework 5
25	Nov. 15	UI (TLC 223)	Krone:
	Nov. 20		Thanksgiving Break
	Nov. 22		Thanksgiving Break
26	Nov. 27	WSU (CUE 407)	Student Led Discussions: Joel Nelson, Shawn Trojahn, & Damilola Olabode Tanner Varrelman Kevin Lewallen		Background material: Lewallen Varrelman Nelson, Trojahn, Olabode
27	Nov. 29	UI (TLC 223)	Student Led Discussions: Leo Epstein Mariah Eckwright, Evan Martin, & Andew Rankin Nicholas Cowan		Background material: Cowan: Kondrashov article, Gillespie pp. 152-3 & 169-70 Epstein: Beissinger article, Beissinger SI Eckwright, Martin, & Rankin
28	Dec. 4	WSU (CUE 407)	Student Led Discussions: Allison Fisher, Martyna Lukaszewicz, Heather Clendenin, & Jordan Culp Kelcey McBride		Background material: McBride Fisher, Lukaszewicz, Clendenin, & Culp: reading 1, reading 2, reading 3,Gillespie section 4.2
29	Dec. 6	UI (TLC 223)	Student Led Discussions: Kelly Christensen & Savannah Kollasch Samuel McCauley & Caylan Kolste Andy Horgan		Homework 5 due Background material: McCauley & Kolste Christensen & Kollasch Horgan: reading 1, reading 2